
Batch Set:
C:\Users\jpeck\Documents\PCORD\Batch\2BC_PerMANOVA.bch

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:56

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5637 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.49350      0.49350       2.5855         0.018000
MtnRange     1    0.95567      0.95567       5.0069         0.000200
Interac.     1    0.33750      0.33750       1.7682         0.090600
Residual    12     2.2905      0.19087    
Total       15     4.0771    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         2.58553        1.03818        4.28067        0.55770         89       0.018000
MtnRange        5.00688        1.02051        4.45487        0.54594          0       0.000200
Interac.        1.76818        1.01136        4.10581        0.53460        452       0.090600
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.77272E-01         25.352
Interac.    0.36656E-01         12.026
Residual    0.19087             62.622
Total       0.30480            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:56

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:56

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5675 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.39918      0.39918       2.0687         0.078200
MtnRange     1     1.5779       1.5779       8.1774         0.000200
Interac.     1    0.14063      0.14063      0.72879         0.601600
Residual    12     2.3155      0.19296    
Total       15     4.4332    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         2.06873        1.04146        9.29389        0.69451        390       0.078200
MtnRange        8.17740        1.04381        6.54029        0.70527          0       0.000200
Interac.        0.72879        1.03946        6.33403        0.71667       3007       0.601600
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.17966             49.970
Interac.   -0.13083E-01         -3.639
Residual    0.19296             53.669
Total       0.35954            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:56

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:57

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5710 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.14339      0.14339      0.60653         0.685600
MtnRange     1     1.1851       1.1851       5.0129         0.002200
Interac.     1    0.12458      0.12458      0.52694         0.780200
Residual    12     2.8370      0.23642    
Total       15     4.2901    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         0.60653        1.04025        8.50665        0.77440       3427       0.685600
MtnRange        5.01285        1.04498        7.64344        0.75727         10       0.002200
Interac.        0.52694        1.04907        7.52093        0.77545       3900       0.780200
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.13257             38.873
Interac.   -0.27960E-01         -8.199
Residual    0.23642             69.325
Total       0.34102            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:57

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:57

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5743 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.27062      0.27062       1.7376         0.139800
MtnRange     1     1.4505       1.4505       9.3138         0.000200
Interac.     1    0.29111      0.29111       1.8692         0.123000
Residual    12     1.8689      0.15574    
Total       15     3.8811    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         1.73763        1.04388       11.94855        0.86911        698       0.139800
MtnRange        9.31383        1.07154        9.18386        0.88192          0       0.000200
Interac.        1.86919        1.06496        9.55107        0.90173        614       0.123000
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.14493             43.326
Interac.    0.33842E-01         10.117
Residual    0.15574             46.558
Total       0.33451            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:57

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:57

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5775 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.21649      0.21649       1.1637         0.337200
MtnRange     1     1.4798       1.4798       7.9545         0.000200
Interac.     1    0.52356      0.52356       2.8144         0.025800
Residual    12     2.2324      0.18603    
Total       15     4.4522    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         1.16373        1.04978        6.53251        0.72118       1685       0.337200
MtnRange        7.95449        1.03919        6.82294        0.70824          0       0.000200
Interac.        2.81439        1.02924        5.78208        0.69062        128       0.025800
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.11953             30.653
Interac.    0.84383E-01         21.640
Residual    0.18603             47.707
Total       0.38994            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:57

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:58

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5808 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.87347E-01  0.87347E-01  0.42814         0.850600
MtnRange     1     1.3783       1.3783       6.7561         0.000400
Interac.     1    0.33895      0.33895       1.6614         0.135200
Residual    12     2.4481      0.20401    
Total       15     4.2528    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         0.42814        1.01212        6.33240        0.64556       4252       0.850600
MtnRange        6.75609        1.02684        7.16221        0.66073          1       0.000400
Interac.        1.66144        1.02815        7.61099        0.67042        675       0.135200
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.12992             35.336
Interac.    0.33736E-01          9.176
Residual    0.20401             55.488
Total       0.36767            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:58

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:58

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5840 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.38661E-02  0.38661E-02  0.26814E-01     0.995200
MtnRange     1     1.9328       1.9328       13.406         0.000200
Interac.     1    0.24628      0.24628       1.7081         0.168400
Residual    12     1.7302      0.14418    
Total       15     3.9131    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         0.02681        1.06898       14.36423        1.01623       4975       0.995200
MtnRange       13.40577        1.06455       13.02134        1.02580          0       0.000200
Interac.        1.70814        1.07950       16.14349        1.06394        841       0.168400
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.21082             55.402
Interac.    0.25525E-01          6.708
Residual    0.14418             37.890
Total       0.38053            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:58

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:58

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5871 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.16784      0.16784       1.0752         0.334600
MtnRange     1     1.8703       1.8703       11.980         0.000200
Interac.     1    0.28816      0.28816       1.8459         0.126600
Residual    12     1.8733      0.15611    
Total       15     4.1996    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         1.07516        1.05010       10.68071        0.87309       1672       0.334600
MtnRange       11.98048        1.04207        8.57120        0.85411          0       0.000200
Interac.        1.84590        1.06017       10.65584        0.87745        632       0.126600
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.19776             51.117
Interac.    0.33013E-01          8.533
Residual    0.15611             40.350
Total       0.38688            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:58

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:59

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5904 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.21970      0.21970       1.0386         0.379400
MtnRange     1     1.3806       1.3806       6.5268         0.000400
Interac.     1    0.39810      0.39810       1.8820         0.093600
Residual    12     2.5383      0.21153    
Total       15     4.5367    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         1.03864        1.02884        6.12184        0.66197       1896       0.379400
MtnRange        6.52679        1.04835        7.24674        0.69466          1       0.000400
Interac.        1.88202        1.03912        5.38710        0.68437        467       0.093600
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.12281             32.236
Interac.    0.46643E-01         12.243
Residual    0.21153             55.522
Total       0.38098            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:59

******************** Permutation based MANOVA (PerMANOVA) ********************
PC-ORD, 6.19                
 5 Sep 2016, 14:42:59

Permutation-based nonparametric MANOVA calculated with method of:
Anderson, M. J.  2001.  A new method for non-parametric multivariate
     analysis of variance.  Austral Ecology 26:32-46.

Bootstrapped PerMANOVA                                                          

        Groups were defined by values of: HostSpp 
                                     and: MtnRange

        Main matrix has:    16 mats     by    13 species 

        Distance measure = Sorensen (Bray-Curtis)        


Evaluation of differences in species  between groups.
Design: Two-way factorial                                  
Randomization test of significance of pseudo F values
     Number of randomizations:        4999
     Random number seed:              5938 selected by time.

--------------------------------------------------------------------
Source     d.f.        SS           MS           F           p *    
--------------------------------------------------------------------
HostSpp      1    0.28004      0.28004       1.6114         0.172800
MtnRange     1     1.4925       1.4925       8.5880         0.000200
Interac.     1    0.54958      0.54958       3.1624         0.018800
Residual    12     2.0854      0.17378    
Total       15     4.4075    
--------------------------------------------------------------------


Statistics from randomizations
---------------------------------------------------------------------------------------------
                                      F from randomized groups              Number   
                  F         --------------------------------------------    > or =   
 Source        Observed         Mean         Maximum          S.Dev       observed F      p * 
----------------------------------------------------------------------------------------------
HostSpp         1.61142        1.05621        8.87513        0.79735        863       0.172800
MtnRange        8.58800        1.05124        7.74431        0.78849          0       0.000200
Interac.        3.16241        1.03046        7.99504        0.74422         93       0.018800
----------------------------------------------------------------------------------------------
* proportion of randomized trials with indicator value 
  equal to or exceeding the observed indicator value.
  p = (1 + number of runs >= observed)/(1 + number of randomized runs)



Variance components estimated for Mixed Model II, first factor assumed fixed)
Ignore variance components if you consider the factor to have fixed effects.
COMPONENTS OF VARIANCE
----------------------------------------
Source     Variance       % of variation
HostSpp                Variance component not estimated for fixed factor
MtnRange    0.11786             30.566
Interac.    0.93948E-01         24.365
Residual    0.17378             45.069
Total       0.38559            100.000
----------------------------------------
**************************** PerMANOVA finished ****************************
 5 Sep 2016, 14:42:59
